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I have recently downloaded the NatNet2.5 SDK and have found all compiled programs in the bin folder except the SimpleServer.exe. I am having issues with building the simple server given I am working with VS2010.

I am also wondering if the sample matlab code can communicate with the SimpleServer.exe program. I am hoping to test some data handling while I wait for my company to place and order, so I need a simulated server to work with the matlab code.

You can use VS2008 to compile the server program. If you have problems, try switching between Debug/Release.

Also, at least for the 2.4 SDK version the instructions in the API are wrong for the client as the command options only show one IP, while the syntax is actually:
SampleClient [ServerIP] [LocalIP] [OutputFilename]

(like shown in the actual source file)